mountain

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mountain [2019/07/06 12:22]
tongyifan
mountain [2019/07/06 12:59] (current)
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 //Note: quick help can be available through putting your mouse on the small question marks besides certain options in this pages.// //Note: quick help can be available through putting your mouse on the small question marks besides certain options in this pages.//
  
-{{http://​www.clickgenome.org/​img/​guide/​200.png?​direct&​}}+{{  http://​www.clickgenome.org/​img/​guide/​200.png?​direct& ​ }}
  
 ===== Setting area ===== ===== Setting area =====
  
-{{http://​www.clickgenome.org/​img/​guide/​201.png?​direct&​}}+{{  http://​www.clickgenome.org/​img/​guide/​201.png?​direct& ​ }}
  
 1. It reminds you which kind of plot you are working on. 1. It reminds you which kind of plot you are working on.
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 A toolbar will show up at the top right of this plotting area when a Mountain plot is created. A toolbar will show up at the top right of this plotting area when a Mountain plot is created.
  
-{{http://​www.clickgenome.org/​img/​guide/​202.png?​direct&​}}+{{  http://​www.clickgenome.org/​img/​guide/​202.png?​direct& ​ }}
  
 1. Zoom in: Rectangular zoom in tool. This tool allows you to select a region to display at full application size. After clicking this botton, your mouse will turn into a small cross. Then click and hold the left mouse button and drag a rectangle around a portion of the screen and have it zoom in. 1. Zoom in: Rectangular zoom in tool. This tool allows you to select a region to display at full application size. After clicking this botton, your mouse will turn into a small cross. Then click and hold the left mouse button and drag a rectangle around a portion of the screen and have it zoom in.
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 ♦ Horizontally zoom in: Slide the mouse wheel (for apple magic mouse, slide up or down) up or down, you can zoom in or zoom out horizontally. ♦ Horizontally zoom in: Slide the mouse wheel (for apple magic mouse, slide up or down) up or down, you can zoom in or zoom out horizontally.
  
-{{http://​www.clickgenome.org/​img/​guide/​203.png?​direct&​}}+{{  http://​www.clickgenome.org/​img/​guide/​203.png?​direct& ​ }}
  
 For your convinence, the sample ID and other details of each individual sample will show up when you put your mouse on the corresponding marker. For your convinence, the sample ID and other details of each individual sample will show up when you put your mouse on the corresponding marker.
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 For example: in the above figure, aftering putting the mouse on a marker, a catalog showed up is: For example: in the above figure, aftering putting the mouse on a marker, a catalog showed up is:
  
-{{http://​www.clickgenome.org/​img/​guide/​204.png?​direct&​}}+{{  http://​www.clickgenome.org/​img/​guide/​204.png?​direct& ​ }}
  
 → First row: the group message of this sample; → First row: the group message of this sample;
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 ===== Figure downloading and DIY area ===== ===== Figure downloading and DIY area =====
  
-{{http://​www.clickgenome.org/​img/​guide/​205.png?​direct&​}}+{{  http://​www.clickgenome.org/​img/​guide/​205.png?​direct& ​ }}
  
 ==== 1. Figure Downloading area: ==== ==== 1. Figure Downloading area: ====
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 The red circle marker highlighted where EGFR gene is in this Mountain plot. You can get it detailed information by putting your mouse on it and hold. The red circle marker highlighted where EGFR gene is in this Mountain plot. You can get it detailed information by putting your mouse on it and hold.
  
-{{http://​www.clickgenome.org/​img/​guide/​206.png?​direct&​}}+{{  http://​www.clickgenome.org/​img/​guide/​206.png?​direct& ​ }}
  
 **Example 2**: Plotting Mountain plot of copy number variations on chromosome 3 of breast invasive carcinoma, head & neck squamous cell carcinoma, lung adenocarcinoma and lung squamous cell carcinoma tumor and non-malignant samples with SOX2 highlighted. **Example 2**: Plotting Mountain plot of copy number variations on chromosome 3 of breast invasive carcinoma, head & neck squamous cell carcinoma, lung adenocarcinoma and lung squamous cell carcinoma tumor and non-malignant samples with SOX2 highlighted.
  
-{{http://​www.clickgenome.org/​img/​guide/​207.png?​direct&​}}+{{  http://​www.clickgenome.org/​img/​guide/​207.png?​direct& ​ }}
  
 You may not like the colors and sizes of the markers plotted in default. Therefore, you can use the Figure DIY options to change the color, size and shapes of markers. You may not like the colors and sizes of the markers plotted in default. Therefore, you can use the Figure DIY options to change the color, size and shapes of markers.
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 The Setting area and the final plot are shown in the following picture. The Setting area and the final plot are shown in the following picture.
  
-{{http://​www.clickgenome.org/​img/​guide/​208.png?​direct&​}}+{{  http://​www.clickgenome.org/​img/​guide/​208.png?​direct& ​ }}
  
  
  • mountain.1562415744.txt.gz
  • Last modified: 2019/07/06 12:22
  • by tongyifan