analyze_yours_mountain

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analyze_yours_mountain [2019/07/06 13:07]
tongyifan
analyze_yours_mountain [2019/07/06 13:08] (current)
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 2. You can upload your data in a file through the dialog box here. Only '​xlsx'​ file is acceptable. Please make sure all data are in the first sheet of this file. If there are more than one group of samples, please put them into separate files. 2. You can upload your data in a file through the dialog box here. Only '​xlsx'​ file is acceptable. Please make sure all data are in the first sheet of this file. If there are more than one group of samples, please put them into separate files.
  
-{{  http://​www.clickgenome.org/​img/​guide/​902.png?​nolink&​30}}+{{  http://​www.clickgenome.org/​img/​guide/​902.png?​nolink& ​ }}
  
 3. You need to specify the datatype here to tell us how to do log transformation (for mRNA expression values, it's log2 transformation;​ for CNV (copy number variation) values, it's log2(CNV/2) transformation). 3. You need to specify the datatype here to tell us how to do log transformation (for mRNA expression values, it's log2 transformation;​ for CNV (copy number variation) values, it's log2(CNV/2) transformation).
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 A toolbar will show up at the top right of this plotting area when a Mountain plot is created. A toolbar will show up at the top right of this plotting area when a Mountain plot is created.
  
-{{  http://​www.clickgenome.org/​img/​guide/​904.png?​nolink&​30}}+{{  http://​www.clickgenome.org/​img/​guide/​904.png?​nolink& ​ }}
  
 1. Zoom in: Rectangular zoom in tool. This tool allows you to select a region to display at full application size. After selecting this botton, your mouse will turn into a small cross. Then click and hold the left mouse button and drag a rectangle around a portion of the screen and have it zoomed in. 1. Zoom in: Rectangular zoom in tool. This tool allows you to select a region to display at full application size. After selecting this botton, your mouse will turn into a small cross. Then click and hold the left mouse button and drag a rectangle around a portion of the screen and have it zoomed in.
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 For your convinence, the sample ID and other details of each individual gene will show up when you put your mouse on the corresponding marker. For your convinence, the sample ID and other details of each individual gene will show up when you put your mouse on the corresponding marker.
  
-{{  http://​www.clickgenome.org/​img/​guide/​906.png?​nolink&​30}}+{{  http://​www.clickgenome.org/​img/​guide/​906.png?​nolink& ​ }}
  
 For example: in the above figure, aftering putting the mouse on a marker, a catalog showed up is: For example: in the above figure, aftering putting the mouse on a marker, a catalog showed up is:
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  • Last modified: 2019/07/06 13:07
  • by tongyifan