analyze_yours_deflection

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analyze_yours_deflection [2019/07/06 13:10]
127.0.0.1 external edit
analyze_yours_deflection [2019/07/06 13:11]
tongyifan
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 ====== Analyze yours: Deflection plot ====== ====== Analyze yours: Deflection plot ======
  
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 //Note: quick help can be available through putting your mouse on the small question marks besides certain options in this pages.// //Note: quick help can be available through putting your mouse on the small question marks besides certain options in this pages.//
  
-{{  http://​www.clickgenome.org/​img/​guide/​1100.png ​ }}+{{  http://​www.clickgenome.org/​img/​guide/​1100.png?​direct& ​ }}
  
-{{  http://​www.clickgenome.org/​img/​guide/​1101.png ​ }}+{{  http://​www.clickgenome.org/​img/​guide/​1101.png?​direct& ​ }}
  
 ===== Setting area ===== ===== Setting area =====
  
-{{  http://​www.clickgenome.org/​img/​guide/​1102.png ​ }}+{{  http://​www.clickgenome.org/​img/​guide/​1102.png?​direct& ​ }}
  
 1. It reminds you which kind of plot you are working on. 1. It reminds you which kind of plot you are working on.
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 The 'Save as Image' button will show up at the top right of this plotting area when a Deflection plot is created. You can click it to swich into a image saving webpage then click right mouse button to save this image. You also can specify the image format and size by selecting the options in the Figure downloading and DIY area. The 'Save as Image' button will show up at the top right of this plotting area when a Deflection plot is created. You can click it to swich into a image saving webpage then click right mouse button to save this image. You also can specify the image format and size by selecting the options in the Figure downloading and DIY area.
  
-{{  http://​www.clickgenome.org/​img/​guide/​1103.png ​ }}+{{  http://​www.clickgenome.org/​img/​guide/​1103.png?​direct& ​ }}
  
 For your convinence, the sample ID and other details of each individual gene will show up when you put your mouse on the corresponding line. For your convinence, the sample ID and other details of each individual gene will show up when you put your mouse on the corresponding line.
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 For example: in the above figure, aftering putting the mouse on a line, a catalog showed up is: For example: in the above figure, aftering putting the mouse on a line, a catalog showed up is:
  
-{{  http://​www.clickgenome.org/​img/​guide/​1104.png ​ }}+{{  http://​www.clickgenome.org/​img/​guide/​1104.png?​direct& ​ }}
  
 From the left to the right are: gene symbol and p-value of this gene in the corresponding two cancer types. Therefore, in this example: the gene symbol is GLRX2, the p-value of its copy number variations in two groups is 1.38e-10 which means it has significantly different copy number variations in these two groups. From the left to the right are: gene symbol and p-value of this gene in the corresponding two cancer types. Therefore, in this example: the gene symbol is GLRX2, the p-value of its copy number variations in two groups is 1.38e-10 which means it has significantly different copy number variations in these two groups.
  
-{{  http://​www.clickgenome.org/​img/​guide/​1105.png ​ }}+{{  http://​www.clickgenome.org/​img/​guide/​1105.png?​direct& ​ }}
  
 ===== Figure downloading and DIY area ===== ===== Figure downloading and DIY area =====
  
-{{  http://​www.clickgenome.org/​img/​guide/​1106.png ​ }}+{{  http://​www.clickgenome.org/​img/​guide/​1106.png?​direct& ​ }}
  
 ==== 1.Figure Downloading area: ==== ==== 1.Figure Downloading area: ====
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 → Please put gene symbols of each group in the first column. If you don't have them, please use numbers or something as symbols. In Mountain plot, the corresponding gene symbol will show up when you put your mouse on any markers. If there are more than one groups, only genes that are common in all groups will be plotted. Therefore, they are necessary information for creating the plot. → Please put gene symbols of each group in the first column. If you don't have them, please use numbers or something as symbols. In Mountain plot, the corresponding gene symbol will show up when you put your mouse on any markers. If there are more than one groups, only genes that are common in all groups will be plotted. Therefore, they are necessary information for creating the plot.
  
-{{  http://​www.clickgenome.org/​img/​guide/​1107.png ​ }}+{{  http://​www.clickgenome.org/​img/​guide/​1107.png?​direct& ​ }}
  
 → Please put the start location for the genes in the second column. They will be used as the x-axis values in the Deflection plot. → Please put the start location for the genes in the second column. They will be used as the x-axis values in the Deflection plot.
  • analyze_yours_deflection.txt
  • Last modified: 2019/07/06 13:11
  • by tongyifan