analyze_yours_beeswarm

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analyze_yours_beeswarm [2019/07/06 13:05]
tongyifan created
analyze_yours_beeswarm [2019/07/06 13:05]
tongyifan
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 +{{indexmenu_n>​12}}
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 ====== Analyze yours: Bee-swarm plot ====== ====== Analyze yours: Bee-swarm plot ======
  
-{{http://​www.clickgenome.org/​img/​guide/​800.png?​nolink&80%}}+{{  http://​www.clickgenome.org/​img/​guide/​800.png?​direct }}
  
-{{http://​www.clickgenome.org/​img/​guide/​801.png?​nolink&80%}}+{{  http://​www.clickgenome.org/​img/​guide/​801.png?​direct }}
  
 In this webpage, you can create Bee-swarm plots of the distributions of your own data. There are two ways to get into the Bee-swarm plot page. In this webpage, you can create Bee-swarm plots of the distributions of your own data. There are two ways to get into the Bee-swarm plot page.
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 → Link area: Necessary links are available for you to switch to other pages or websites. → Link area: Necessary links are available for you to switch to other pages or websites.
  
-//Note: quick help can be available through putting your mouse on the small question marks besides certain options in this pages.// ===== Setting area =====+//Note: quick help can be available through putting your mouse on the small question marks besides certain options in this pages.// 
 +===== Setting area =====
  
-{{http://​www.clickgenome.org/​img/​guide/​802.png?​nolink&30%}}+{{  http://​www.clickgenome.org/​img/​guide/​802.png?​direct }}
  
 1. It reminds you which kind of plot you are working on. 1. It reminds you which kind of plot you are working on.
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 For two cutoff values, if cutoff1 > cutoff2, then For two cutoff values, if cutoff1 > cutoff2, then
  
-∇   ​percentages of ≥ cutoff1+∇ percentages of ≥ cutoff1
  
-∇   ​percentages of ≥ cutoff2 and < cutoff1+∇ percentages of ≥ cutoff2 and < cutoff1
  
-∇   ​percentages of < cutoff2 \\+∇ percentages of < cutoff2\\
 will be calculated and shown in the plotting area beside the corresponding bee-swarm plots. will be calculated and shown in the plotting area beside the corresponding bee-swarm plots.
  
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 Bee-swarm figures will be plotted in this area as follows. Bee-swarm figures will be plotted in this area as follows.
  
-{{http://​www.clickgenome.org/​img/​guide/​803.png?​nolink&80%}}+{{  http://​www.clickgenome.org/​img/​guide/​803.png?​direct }}
  
-{{http://​www.clickgenome.org/​img/​guide/​804.png?​nolink&30%}}+{{  http://​www.clickgenome.org/​img/​guide/​804.png?​direct }}
  
 A toolbar will show up at the top right of this plotting area when Bee-swarm plots are created. A toolbar will show up at the top right of this plotting area when Bee-swarm plots are created.
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 For your convinence, the sample ID and other details of each individual sample will show up when you put your mouse on the corresponding marker. For example: in the following figure, aftering putting the mouse on a marker, a catalog showed up is: For your convinence, the sample ID and other details of each individual sample will show up when you put your mouse on the corresponding marker. For example: in the following figure, aftering putting the mouse on a marker, a catalog showed up is:
  
-{{http://​www.clickgenome.org/​img/​guide/​805.png?​nolink&30%}}+{{  http://​www.clickgenome.org/​img/​guide/​805.png?​direct }}
  
 ♦ First row: the group message of this sample; ♦ First row: the group message of this sample;
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 ♦ Second row: x-axis, y-axis, sample ID: ♦ Second row: x-axis, y-axis, sample ID:
  
-Δ  x-axis: calculated from a program to separate samples in a bee-swarm like plot, no biological meaning;+Δ x-axis: calculated from a program to separate samples in a bee-swarm like plot, no biological meaning;
  
-Δ  y-axis: the values in your uploaded table;+Δ y-axis: the values in your uploaded table;
  
-Δ  sample ID: the sample IDs in your uploaded table.+Δ sample ID: the sample IDs in your uploaded table.
  
 ===== Figure downloading and DIY area ===== ===== Figure downloading and DIY area =====
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 Select the group whose style you want to modify, then modify the color, shape of the markers, box, static lines here. Select the group whose style you want to modify, then modify the color, shape of the markers, box, static lines here.
  
-{{http://​www.clickgenome.org/​img/​guide/​806.png?​nolink&80%}}+{{  http://​www.clickgenome.org/​img/​guide/​806.png?​direct }}
  
 ==== 1.Figure Downloading area: ==== ==== 1.Figure Downloading area: ====
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 ===== Example data area ===== ===== Example data area =====
  
-{{http://​www.clickgenome.org/​img/​guide/​807.png?​nolink&80%}}+{{  http://​www.clickgenome.org/​img/​guide/​807.png?​direct }}
  
 Only '​xlsx'​ file type is acceptable! The default sheet is the first sheet of each '​*.xlsx'​ file. This area shows the table format for you to arrange your data. You also can download the example file and use it to try the functions provided in this page. Only '​xlsx'​ file type is acceptable! The default sheet is the first sheet of each '​*.xlsx'​ file. This area shows the table format for you to arrange your data. You also can download the example file and use it to try the functions provided in this page.
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 ===== Examples: ===== ===== Examples: =====
  
-{{http://​www.clickgenome.org/​img/​guide/​808.png?​nolink&80%}}+{{  http://​www.clickgenome.org/​img/​guide/​808.png?​direct }}
  
 In this figure, two cutoff values are given: 12 and 6. According to the digital figures in the plot, we can get to know that for the uploaded data, the percentages are In this figure, two cutoff values are given: 12 and 6. According to the digital figures in the plot, we can get to know that for the uploaded data, the percentages are
  • analyze_yours_beeswarm.txt
  • Last modified: 2019/07/06 13:05
  • by tongyifan